Variant report

Variant	rs12451260
Chromosome Location	chr17:45946002-45946003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45944883..45946724-chr17:45969960..45972616,2	MCF-7	breast:
2	chr17:45945306..45947161-chr17:45950628..45952334,2	K562	blood:
3	chr17:45942966..45946834-chr17:45959639..45963061,4	MCF-7	breast:
4	chr17:45945622..45948288-chr17:46019914..46021881,2	MCF-7	breast:
5	chr17:45918706..45921396-chr17:45943154..45946269,3	K562	blood:
6	chr17:45932447..45935433-chr17:45945391..45949392,4	K562	blood:
7	chr17:45944200..45947403-chr17:45947781..45950408,6	K562	blood:
8	chr17:45944968..45947939-chr17:45958464..45960415,2	K562	blood:
9	chr17:45924111..45929589-chr17:45940263..45947435,9	MCF-7	breast:
10	chr17:45933613..45936211-chr17:45944971..45946687,2	K562	blood:
11	chr17:45919624..45921396-chr17:45944468..45946269,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56363348	1.00[EUR][1000 genomes]
rs57948485	1.00[EUR][1000 genomes]
rs58974249	1.00[EUR][1000 genomes]
rs59483607	1.00[EUR][1000 genomes]
rs73985416	1.00[EUR][1000 genomes]
rs73985417	1.00[EUR][1000 genomes]
rs73985418	1.00[EUR][1000 genomes]
rs73985419	1.00[EUR][1000 genomes]
rs73985421	1.00[EUR][1000 genomes]
rs73985422	1.00[EUR][1000 genomes]
rs73985424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908573	chr17:45858487-45956073	Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv518892	chr17:45887951-46029432	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45935800-45946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:45942200-45948200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:45942400-45946600	Weak transcription	Hela-S3	cervix
4	chr17:45942800-45947000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr17:45943000-45946400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:45943000-45950000	Weak transcription	HSMM	muscle
7	chr17:45943200-45947600	Weak transcription	A549	lung
8	chr17:45943400-45946600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:45944000-45947800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr17:45944200-45946200	Active TSS	Spleen	Spleen
11	chr17:45945000-45946600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr17:45945000-45948400	Enhancers	K562	blood
13	chr17:45945200-45946400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:45945800-45947800	Enhancers	Placenta	Placenta
15	chr17:45946000-45946600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr17:45946000-45949600	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links