Variant report

Variant	rs1245442
Chromosome Location	chr12:62529429-62529430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1146079	0.80[ASN][1000 genomes]
rs1146083	0.80[JPT][hapmap]
rs1245440	0.82[JPT][hapmap]
rs1663463	0.82[JPT][hapmap]
rs1663473	0.82[JPT][hapmap]
rs1795209	0.82[JPT][hapmap]
rs2440584	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348672	0.89[CHB][hapmap]
rs348676	0.89[CHB][hapmap]
rs61920575	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62527000-62534000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62528800-62530400	Enhancers	NHDF-Ad	bronchial
3	chr12:62529000-62530400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:62529400-62529800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:62529400-62530000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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