Variant report

Variant	rs1245490
Chromosome Location	chr1:95074542-95074543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1778195	1.00[AMR][1000 genomes]
rs1778217	1.00[AMR][1000 genomes]
rs1936310	1.00[AMR][1000 genomes]
rs2971935	1.00[AMR][1000 genomes]
rs3112388	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv871279	chr1:95028981-95083836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1804937	chr1:95051930-95081587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95061400-95076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:95065200-95081000	Enhancers	Stomach Mucosa	stomach
3	chr1:95065400-95081400	Enhancers	Fetal Intestine Small	intestine
4	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:95068000-95078200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:95069400-95077800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:95069600-95078200	Weak transcription	Dnd41	blood
8	chr1:95070400-95078800	Enhancers	Fetal Intestine Large	intestine
9	chr1:95071800-95076800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:95072000-95075200	Enhancers	Colonic Mucosa	Colon
11	chr1:95072000-95077400	Weak transcription	Small Intestine	intestine
12	chr1:95072200-95075400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr1:95072200-95078800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:95072200-95080200	Weak transcription	Primary B cells from cord blood	blood
15	chr1:95072800-95075400	Enhancers	Placenta	Placenta
16	chr1:95073200-95075000	Enhancers	Pancreas	Pancrea
17	chr1:95073200-95077000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:95073200-95077800	Weak transcription	NHEK	skin
19	chr1:95073400-95074600	Enhancers	Gastric	stomach
20	chr1:95073400-95075000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:95073600-95075600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:95073600-95076800	Weak transcription	Lung	lung
23	chr1:95073800-95075600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:95073800-95075600	Enhancers	Fetal Stomach	stomach
25	chr1:95073800-95077600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:95074000-95074600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr1:95074000-95075200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:95074000-95075400	Enhancers	NH-A	brain
29	chr1:95074000-95076000	Enhancers	K562	blood
30	chr1:95074000-95077400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:95074200-95075000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr1:95074200-95075000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:95074200-95076800	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr1:95074200-95076800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr1:95074400-95074600	Enhancers	A549	lung
36	chr1:95074400-95075000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:95074400-95075400	Enhancers	NHLF	lung
38	chr1:95074400-95075600	Enhancers	HepG2	liver
39	chr1:95074400-95076000	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:95074400-95076800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr1:95074400-95077000	Weak transcription	HMEC	breast

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