Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10083911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13381960	1.00[EUR][1000 genomes]
rs1551366	1.00[EUR][1000 genomes]
rs61448765	1.00[AMR][1000 genomes]
rs6505809	1.00[EUR][1000 genomes]
rs7232518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7236501	1.00[EUR][1000 genomes]
rs9303786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13303200-13318600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr18:13303200-13318600	Weak transcription	Right Atrium	heart
3	chr18:13303600-13318600	Weak transcription	Colon Smooth Muscle	Colon
4	chr18:13310600-13318600	Weak transcription	Right Ventricle	heart
5	chr18:13314400-13316800	ZNF genes & repeats	Thymus	Thymus
6	chr18:13314400-13317200	ZNF genes & repeats	Fetal Thymus	thymus
7	chr18:13314600-13317200	ZNF genes & repeats	Brain Germinal Matrix	brain
8	chr18:13314600-13317200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr18:13314800-13325000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr18:13315200-13319200	Weak transcription	Spleen	Spleen
11	chr18:13315800-13316800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr18:13315800-13317200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:13316000-13317000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr18:13316400-13316800	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr18:13316400-13316800	ZNF genes & repeats	Left Ventricle	heart
16	chr18:13316400-13318600	Weak transcription	Fetal Heart	heart
17	chr18:13316400-13318600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr18:13316600-13319000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr18:13316600-13319000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr18:13316600-13322600	Weak transcription	Dnd41	blood

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