Variant report
| Variant | rs12455551 |
|---|---|
| Chromosome Location | chr18:28289635-28289636 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr18:28289524-28289897 | H1-neurons | neurons: | n/a | n/a |
| 2 | POLR2A | chr18:28289520-28289914 | H1-neurons | neurons: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:28284696..28286286-chr18:28288324..28290734,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266196 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1943556 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1943561 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1943563 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1943564 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1943565 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1943569 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1943570 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1943571 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1943572 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1943573 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1970694 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2678793 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2678797 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2678798 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2678799 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2678800 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2678802 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2733129 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2850282 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2850283 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2850285 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7234719 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428675 | chr18:28278505-28444515 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28289200-28290000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
