Variant report

Variant	rs12457608
Chromosome Location	chr18:25255494-25255495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12454233	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12455088	0.82[AMR][1000 genomes]
rs12457859	0.82[AMR][1000 genomes]
rs12457882	0.80[AMR][1000 genomes]
rs35009762	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55771410	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72889093	0.82[AMR][1000 genomes]
rs72889097	0.82[AMR][1000 genomes]
rs72890815	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8090732	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2763180	chr18:25250167-25257562	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25254200-25255800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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