Variant report

Variant	rs12457610
Chromosome Location	chr18:8210848-8210849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10468776	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs11659222	0.86[YRI][hapmap]
rs11661214	0.86[YRI][hapmap]
rs12454728	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs722973	0.82[JPT][hapmap]
rs7232432	0.86[YRI][hapmap]
rs7239742	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs7242256	0.85[JPT][hapmap]
rs8092312	0.86[YRI][hapmap]
rs8094072	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8095318	0.86[YRI][hapmap]
rs978862	0.85[JPT][hapmap]
rs9958585	0.86[YRI][hapmap]
rs9967455	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv458021	chr18:8193657-8227344	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470407	chr18:8193657-8227344	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv576428	chr18:8193657-8227344	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8170800-8225400	Weak transcription	Aorta	Aorta
2	chr18:8178000-8230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8178200-8212400	Weak transcription	Adipose Nuclei	Adipose
4	chr18:8178200-8216400	Weak transcription	Spleen	Spleen
5	chr18:8181400-8216800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:8181600-8212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:8187400-8211800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr18:8191200-8288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr18:8191800-8211800	Weak transcription	Left Ventricle	heart
10	chr18:8194600-8225600	Weak transcription	Psoas Muscle	Psoas
11	chr18:8196800-8215000	Weak transcription	Thymus	Thymus
12	chr18:8199400-8225400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:8200600-8211600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr18:8204400-8212000	Weak transcription	Fetal Heart	heart
15	chr18:8204400-8214600	Weak transcription	Fetal Stomach	stomach
16	chr18:8205600-8225600	Weak transcription	Lung	lung
17	chr18:8207400-8211800	Weak transcription	Hela-S3	cervix
18	chr18:8208600-8224200	Weak transcription	A549	lung
19	chr18:8209400-8211800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr18:8209800-8212200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:8210200-8213000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:8210200-8214200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr18:8210400-8212800	Weak transcription	Fetal Thymus	thymus
24	chr18:8210400-8217200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:8210600-8212200	Weak transcription	Liver	Liver
26	chr18:8210800-8213000	Weak transcription	Fetal Muscle Leg	muscle

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