Variant report
Variant | rs12464089 |
---|---|
Chromosome Location | chr2:211551652-211551653 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10171279 | 0.98[ASN][1000 genomes] |
rs10194936 | 0.99[ASN][1000 genomes] |
rs10490320 | 0.99[ASN][1000 genomes] |
rs10932357 | 0.85[EUR][1000 genomes] |
rs10932358 | 0.94[EUR][1000 genomes] |
rs11887861 | 0.98[ASN][1000 genomes] |
rs12471767 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12473390 | 0.87[EUR][1000 genomes] |
rs12622504 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12622994 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs12623361 | 0.98[ASN][1000 genomes] |
rs13386028 | 0.96[ASN][1000 genomes] |
rs13402511 | 0.99[ASN][1000 genomes] |
rs16824974 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs16844788 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs16844800 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16844851 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1861897 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2287414 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2287415 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2371015 | 0.98[ASN][1000 genomes] |
rs2371016 | 0.99[ASN][1000 genomes] |
rs2371018 | 0.99[ASN][1000 genomes] |
rs2371021 | 0.99[ASN][1000 genomes] |
rs2371022 | 0.99[ASN][1000 genomes] |
rs2371023 | 0.99[ASN][1000 genomes] |
rs2887915 | 0.99[ASN][1000 genomes] |
rs2887930 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs35863145 | 0.97[ASN][1000 genomes] |
rs4142151 | 0.98[ASN][1000 genomes] |
rs4142152 | 0.97[ASN][1000 genomes] |
rs4142153 | 0.98[ASN][1000 genomes] |
rs4310998 | 0.99[ASN][1000 genomes] |
rs4381725 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4467202 | 0.98[ASN][1000 genomes] |
rs4584964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4672588 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4673547 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4673549 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs5002316 | 0.98[ASN][1000 genomes] |
rs57395348 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs58393285 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs59602419 | 0.91[ASN][1000 genomes] |
rs6735614 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs6752652 | 0.96[ASN][1000 genomes] |
rs7425715 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs9288420 | 0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3398091 | chr2:211315261-211634200 | Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | nsv1013658 | chr2:211447246-211809945 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv536135 | chr2:211447246-211809945 | Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv536136 | chr2:211497528-211830019 | Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv821631 | chr2:211528918-211658981 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:211544800-211552000 | Weak transcription | Fetal Intestine Small | intestine |
2 | chr2:211547000-211552200 | Weak transcription | Duodenum Mucosa | Duodenum |
3 | chr2:211547000-211553600 | Weak transcription | Liver | Liver |
4 | chr2:211547200-211552200 | Weak transcription | Fetal Intestine Large | intestine |
5 | chr2:211551200-211552000 | Enhancers | HepG2 | liver |
6 | chr2:211551400-211552600 | Weak transcription | Brain Germinal Matrix | brain |