Variant report

Variant	rs12467586
Chromosome Location	chr2:67053628-67053629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11126100	0.90[EUR][1000 genomes]
rs11676568	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11690493	0.89[EUR][1000 genomes]
rs17032590	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs1863143	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2194668	0.89[EUR][1000 genomes]
rs2194669	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2194670	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7566349	0.89[EUR][1000 genomes]
rs7591850	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs868373	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67050200-67055000	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:67052200-67053800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:67053600-67053800	Enhancers	Fetal Intestine Large	intestine
4	chr2:67053600-67054400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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