Variant report

Variant	rs12469087
Chromosome Location	chr2:177642821-177642822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10930752	0.83[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11889984	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12467333	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12611718	0.82[CHB][hapmap]
rs12618099	1.00[CHB][hapmap]
rs2221939	0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs4021394	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4600700	0.82[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4894197	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4894198	1.00[CHB][hapmap]
rs4894200	0.83[CEU][hapmap];0.82[CHB][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6706063	0.83[CEU][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs6706426	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6758766	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177628800-177655400	Weak transcription	Ovary	ovary
2	chr2:177634600-177643800	Weak transcription	Psoas Muscle	Psoas
3	chr2:177641800-177643000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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