Variant report

Variant	rs12471892
Chromosome Location	chr2:21878048-21878049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10199848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390535	0.90[EUR][1000 genomes]
rs13421382	0.80[AMR][1000 genomes]
rs13430310	0.90[EUR][1000 genomes]
rs994286	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1004702	chr2:21874266-21934331	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21871000-21878800	Weak transcription	Fetal Lung	lung
2	chr2:21874200-21881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:21874400-21879800	Weak transcription	Ovary	ovary
4	chr2:21875800-21881200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:21875800-21881200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:21876000-21881000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:21876200-21881000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr2:21876200-21881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:21876400-21878200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:21876400-21881000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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