Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11125348	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11688722	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12464044	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12464123	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12464451	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12472181	0.86[ASN][1000 genomes]
rs12472600	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12476371	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12990068	0.82[AMR][1000 genomes]
rs12990382	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13402444	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1477058	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2160408	0.85[ASN][1000 genomes]
rs4971739	0.83[ASN][1000 genomes]
rs7565012	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7570491	0.82[EUR][1000 genomes]
rs7603699	0.86[ASN][1000 genomes]
rs7603819	0.87[ASN][1000 genomes]
rs9678540	0.82[ASN][1000 genomes]
rs9678552	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv833836	chr2:37966343-38114077	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38024200-38035600	Weak transcription	Fetal Kidney	kidney
2	chr2:38026400-38036000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:38030400-38034200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:38030800-38036000	Weak transcription	Ovary	ovary
5	chr2:38030800-38036800	Weak transcription	Aorta	Aorta
6	chr2:38031000-38034200	Weak transcription	HSMM	muscle
7	chr2:38031000-38035800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:38031000-38036200	Weak transcription	Osteobl	bone
9	chr2:38031000-38037200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:38031200-38033800	Weak transcription	HSMMtube	muscle
11	chr2:38031200-38035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:38031200-38036000	Weak transcription	Muscle Satellite Cultured Cells	--

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