Variant report

Variant	rs1247356
Chromosome Location	chr6:161353574-161353575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161349966..161354183-chr6:161410810..161413824,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1247293	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247295	0.92[ASN][1000 genomes]
rs1247297	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247301	0.91[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247303	0.91[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247311	0.96[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1247348	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1247349	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1247351	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1247352	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1247354	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1247355	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1247359	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs1937475	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2248982	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2465845	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2489957	0.82[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2489959	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs935184	0.92[ASN][1000 genomes]
rs9365233	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3392270	chr6:161353362-161357560	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161348800-161354000	Weak transcription	K562	blood
2	chr6:161352600-161355200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:161352600-161355400	Weak transcription	Esophagus	oesophagus
4	chr6:161352600-161355400	Weak transcription	Lung	lung
5	chr6:161352800-161354200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:161352800-161354200	Weak transcription	Placenta	Placenta
7	chr6:161352800-161355400	Weak transcription	Pancreas	Pancrea
8	chr6:161352800-161355600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:161352800-161357200	Weak transcription	Fetal Brain Male	brain
10	chr6:161353000-161354200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:161353000-161355400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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