Variant report

Variant rs12480935
Chromosome Location chr20:16538653-16538654
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16509200-16553000 Weak transcription Primary T cells from cord blood blood
2 chr20:16511600-16549000 Weak transcription Colonic Mucosa Colon
3 chr20:16534600-16553600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr20:16535800-16538800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr20:16535800-16539000 Weak transcription Fetal Intestine Small intestine
6 chr20:16536000-16551400 Weak transcription Right Ventricle heart
7 chr20:16537000-16543600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr20:16537000-16548800 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr20:16537200-16549200 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr20:16537200-16552000 Weak transcription Stomach Smooth Muscle stomach
11 chr20:16537400-16538800 Weak transcription Left Ventricle heart
12 chr20:16537400-16538800 Weak transcription Lung lung
13 chr20:16537400-16540800 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr20:16537400-16545400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr20:16537400-16545400 Weak transcription Pancreas Pancrea
16 chr20:16537400-16550200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr20:16537400-16551200 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr20:16537400-16553400 Weak transcription Aorta Aorta
19 chr20:16537600-16541000 Weak transcription Osteobl bone
20 chr20:16537600-16541200 Weak transcription Muscle Satellite Cultured Cells --
21 chr20:16537600-16543000 Weak transcription Psoas Muscle Psoas
22 chr20:16537600-16543600 Weak transcription A549 lung
23 chr20:16537600-16545400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr20:16537600-16551400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr20:16537600-16551400 Weak transcription Esophagus oesophagus
26 chr20:16537600-16551800 Weak transcription Adipose Nuclei Adipose
27 chr20:16538000-16538800 Enhancers Brain Substantia Nigra brain
28 chr20:16538400-16539200 Enhancers Brain Cingulate Gyrus brain
29 chr20:16538400-16546800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr20:16538400-16550600 Weak transcription NHEK skin

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