Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10937506	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10937508	0.94[AMR][1000 genomes]
rs10937509	0.94[AMR][1000 genomes]
rs12486616	0.94[AMR][1000 genomes]
rs12488157	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12488316	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12491520	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497353	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12497419	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12629345	1.00[AMR][1000 genomes]
rs12629883	0.83[AMR][1000 genomes]
rs12630470	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12635473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886385	0.88[AMR][1000 genomes]
rs55844081	0.94[AMR][1000 genomes]
rs58284414	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60279150	0.94[AMR][1000 genomes]
rs60432190	0.88[ASN][1000 genomes]
rs60694545	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61440395	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73888421	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008969	chr3:191192569-191383856	Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv915689	chr3:191244719-191479974	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv997817	chr3:191284834-191475809	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1001082	chr3:191320636-191579587	Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191325200-191332400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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