Variant report

Variant	rs12488102
Chromosome Location	chr3:112860159-112860160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10511320	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10511322	1.00[ASN][1000 genomes]
rs11919752	1.00[ASN][1000 genomes]
rs11922222	1.00[ASN][1000 genomes]
rs12486061	1.00[ASN][1000 genomes]
rs12486305	1.00[ASN][1000 genomes]
rs12495166	1.00[ASN][1000 genomes]
rs12495521	1.00[ASN][1000 genomes]
rs34229546	1.00[ASN][1000 genomes]
rs73221996	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7622601	1.00[ASN][1000 genomes]
rs931699	1.00[ASN][1000 genomes]
rs9830509	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112847800-112866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:112849400-112865200	Weak transcription	Fetal Stomach	stomach
3	chr3:112852800-112866800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:112855000-112866800	Weak transcription	Pancreas	Pancrea
5	chr3:112858600-112867400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:112858800-112861200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:112859200-112860200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:112859400-112860800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:112859600-112860200	Enhancers	NHEK	skin
10	chr3:112859800-112860600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr3:112859800-112860800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:112859800-112861200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:112859800-112862800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr3:112860000-112860200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:112860000-112860200	Enhancers	HMEC	breast
16	chr3:112860000-112860400	Enhancers	Colon Smooth Muscle	Colon
17	chr3:112860000-112861400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:112860000-112861800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:112860000-112862200	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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