The 2.0 version of rSNPBase

Variant report

Variant rs12488589
Chromosome Location chr3:20182236-20182237
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:20116400-20194800 Weak transcription NHDF-Ad bronchial
2 chr3:20141200-20222400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:20142600-20189400 Weak transcription Fetal Brain Male brain
4 chr3:20147600-20194200 Weak transcription Dnd41 blood
5 chr3:20151000-20196800 Weak transcription Stomach Mucosa stomach
6 chr3:20152000-20182800 Weak transcription Colonic Mucosa Colon
7 chr3:20159200-20201400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr3:20162200-20183400 Weak transcription Gastric stomach
9 chr3:20162200-20184000 Weak transcription Right Ventricle heart
10 chr3:20162800-20183000 Weak transcription Fetal Heart heart
11 chr3:20162800-20198200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr3:20164400-20204400 Weak transcription Small Intestine intestine
13 chr3:20164800-20211400 Weak transcription Placenta Amnion Placenta Amnion
14 chr3:20167800-20196600 Weak transcription K562 blood
15 chr3:20167800-20226000 Weak transcription Muscle Satellite Cultured Cells --
16 chr3:20168000-20183600 Weak transcription Primary hematopoietic stem cells blood
17 chr3:20168600-20182800 Strong transcription Monocytes-CD14+_RO01746 blood
18 chr3:20168800-20200800 Weak transcription GM12878-XiMat blood
19 chr3:20169400-20184400 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr3:20169600-20182400 Weak transcription Brain Hippocampus Middle brain
21 chr3:20169600-20182600 Weak transcription Rectal Smooth Muscle rectum
22 chr3:20169600-20183400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr3:20169600-20183400 Weak transcription Fetal Muscle Trunk muscle
24 chr3:20169600-20189600 Weak transcription Fetal Intestine Large intestine
25 chr3:20169600-20189600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr3:20169600-20198400 Weak transcription Aorta Aorta
27 chr3:20169600-20198400 Weak transcription Pancreas Pancrea
28 chr3:20169800-20182400 Weak transcription Colon Smooth Muscle Colon
29 chr3:20169800-20183600 Weak transcription Brain Angular Gyrus brain
30 chr3:20169800-20201600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr3:20169800-20202000 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr3:20170000-20183000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
33 chr3:20170400-20184800 Weak transcription Duodenum Smooth Muscle Duodenum
34 chr3:20172000-20183000 Weak transcription Brain Cingulate Gyrus brain
35 chr3:20172200-20182400 Weak transcription Brain Substantia Nigra brain
36 chr3:20174800-20190000 Weak transcription Placenta Placenta
37 chr3:20175800-20196800 Strong transcription Primary T cells fromperipheralblood blood
38 chr3:20177800-20195200 Strong transcription Primary T helper cells fromperipheralblood blood
39 chr3:20178200-20185800 Strong transcription Primary monocytes fromperipheralblood blood
40 chr3:20178200-20185800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr3:20178200-20195200 Strong transcription Primary T regulatory cells fromperipheralblood blood
42 chr3:20178400-20185400 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr3:20178400-20185600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
44 chr3:20178400-20186000 Strong transcription Primary T helper cells PMA-I stimulated --
45 chr3:20178400-20191800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
46 chr3:20179000-20182400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr3:20179000-20183400 Weak transcription Psoas Muscle Psoas
48 chr3:20179000-20196400 Weak transcription HUVEC blood vessel
49 chr3:20179200-20182600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr3:20179200-20183000 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015