Variant report

Variant	rs12489706
Chromosome Location	chr3:17015249-17015250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10510469	0.86[CEU][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12487053	0.80[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73039077	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980048	chr3:16995372-17016178	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:16987400-17015600	Weak transcription	Aorta	Aorta
2	chr3:17009200-17026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:17010400-17015600	Weak transcription	Right Ventricle	heart
4	chr3:17013400-17016200	Weak transcription	Adipose Nuclei	Adipose
5	chr3:17013800-17016200	Weak transcription	Fetal Heart	heart
6	chr3:17014400-17016000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr3:17014600-17015400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:17014600-17015400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:17014600-17016600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:17014800-17019600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:17014800-17033600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:17014800-17038800	Weak transcription	Primary B cells from cord blood	blood
13	chr3:17015000-17017400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:17015000-17018000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:17015000-17019400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:17015200-17016000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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