Variant report

Variant	rs12493481
Chromosome Location	chr3:151261538-151261539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151255227..151257598-chr3:151259355..151262093,2	MCF-7	breast:
2	chr3:151258944..151262061-chr3:151269101..151271592,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12488914	0.90[ASN][1000 genomes]
rs12490875	0.86[ASN][1000 genomes]
rs12495347	0.90[ASN][1000 genomes]
rs55661110	0.93[ASN][1000 genomes]
rs56895157	0.90[ASN][1000 genomes]
rs57616344	0.88[ASN][1000 genomes]
rs58875374	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151256800-151268600	Weak transcription	Right Atrium	heart
2	chr3:151257400-151262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:151257400-151271600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:151257600-151261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:151257600-151270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:151259800-151263200	Weak transcription	Fetal Lung	lung
7	chr3:151260800-151262400	Enhancers	Dnd41	blood
8	chr3:151261000-151261600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:151261000-151261600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:151261000-151261600	Enhancers	Ovary	ovary
11	chr3:151261000-151261800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:151261000-151261800	Enhancers	K562	blood
13	chr3:151261000-151262000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:151261000-151262200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:151261000-151262200	Enhancers	HMEC	breast
16	chr3:151261000-151262400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:151261000-151262400	Enhancers	A549	lung
18	chr3:151261000-151264000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:151261200-151261600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:151261200-151261600	Enhancers	H9 Cell Line	embryonic stem cell
21	chr3:151261200-151261600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:151261200-151261600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:151261200-151261600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:151261200-151261800	Enhancers	HepG2	liver
25	chr3:151261200-151262000	Enhancers	NHEK	skin
26	chr3:151261200-151262200	Enhancers	NH-A	brain
27	chr3:151261200-151263400	Enhancers	Hela-S3	cervix
28	chr3:151261400-151261800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:151261400-151262200	Enhancers	Fetal Thymus	thymus
30	chr3:151261400-151268600	Weak transcription	Esophagus	oesophagus
31	chr3:151261400-151268600	Weak transcription	Gastric	stomach

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