Variant report

Variant	rs12493534
Chromosome Location	chr3:88306092-88306093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12496773	0.83[ASN][1000 genomes]
rs12634175	0.88[ASN][1000 genomes]
rs1379694	0.83[ASN][1000 genomes]
rs17025652	0.83[ASN][1000 genomes]
rs2199015	0.88[ASN][1000 genomes]
rs56999350	0.88[ASN][1000 genomes]
rs57063251	0.81[ASN][1000 genomes]
rs59326420	0.88[ASN][1000 genomes]
rs61329039	0.89[ASN][1000 genomes]
rs62269289	0.88[ASN][1000 genomes]
rs6777576	0.88[ASN][1000 genomes]
rs6778788	0.88[ASN][1000 genomes]
rs6787061	0.88[ASN][1000 genomes]
rs6788674	0.88[ASN][1000 genomes]
rs754816	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7647666	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1013031	chr3:88256289-88347505	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3366990	chr3:88293106-88346403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88305800-88308200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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