Variant report

Variant	rs12495344
Chromosome Location	chr3:191033763-191033764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:191032916..191035495-chr3:191046200..191047748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152492	Chromatin interaction
ENSG00000188958	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10804934	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10937476	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12485794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12485795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12486514	0.97[ASN][1000 genomes]
rs12488903	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12490558	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12491647	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12494331	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12494416	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12495302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1542672	0.80[EUR][1000 genomes]
rs1594951	0.80[EUR][1000 genomes]
rs16866481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1994377	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1994378	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2117543	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2364378	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35771542	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247187	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4247188	0.80[EUR][1000 genomes]
rs4687208	0.80[EUR][1000 genomes]
rs5021498	0.81[EUR][1000 genomes]
rs56395850	0.80[EUR][1000 genomes]
rs6444538	0.94[EUR][1000 genomes]
rs73888532	0.80[EUR][1000 genomes]
rs73888533	0.80[EUR][1000 genomes]
rs73888550	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs746355	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7648137	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9808988	0.80[EUR][1000 genomes]
rs9836519	0.80[EUR][1000 genomes]
rs9845311	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9848636	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9855244	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9856015	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9861203	0.82[EUR][1000 genomes]
rs9872208	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428100	chr3:190793797-191092633	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931943	chr3:190860224-191321873	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2757910	chr3:190867011-191279107	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2759209	chr3:190867011-191279107	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv878101	chr3:190891939-191059322	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv428428	chr3:190936834-191215596	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv998208	chr3:191021434-191175350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv1851611	chr3:191028147-191073560	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:191032000-191034000	Enhancers	Adipose Nuclei	Adipose
2	chr3:191032800-191033800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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