Variant report

Variant	rs12498781
Chromosome Location	chr4:133183457-133183458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11723075	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727344	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11733495	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12504702	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510583	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512512	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103069	0.82[AFR][1000 genomes]
rs13105689	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114087	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13120191	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120699	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13138154	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13140752	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144255	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144856	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13145154	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499338	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1499339	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499340	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484687	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550533	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133488	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34524597	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35664969	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62317685	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62320299	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825876	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848838	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693535	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031888	chr4:132903485-133355824	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv595445	chr4:133022641-133338765	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv880003	chr4:133047300-133513991	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv880004	chr4:133093090-133236522	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv880005	chr4:133101094-133233538	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757955	chr4:133153860-133298149	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759283	chr4:133153860-133298149	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv461645	chr4:133160255-133293122	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv595446	chr4:133160255-133293122	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv595447	chr4:133160737-133252054	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv880006	chr4:133160737-133278913	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv880007	chr4:133160737-133397984	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv880008	chr4:133164679-133212878	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv880009	chr4:133164679-133233538	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv880010	chr4:133165898-133236522	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv880011	chr4:133165898-133278913	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv880012	chr4:133165898-133397984	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv880013	chr4:133165898-133461762	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	esv1828903	chr4:133171171-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv595448	chr4:133171171-133236522	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv880014	chr4:133171171-133236522	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv880015	chr4:133176897-133236522	Weak transcription Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
23	nsv880016	chr4:133176897-133257963	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv880017	chr4:133176897-133270056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv880018	chr4:133176897-133278913	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv880019	chr4:133176897-133508970	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	esv3464539	chr4:133179102-133184900	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv1794547	chr4:133179465-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
29	esv1804365	chr4:133179465-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv1807479	chr4:133179465-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3464541	chr4:133180027-133184075	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	esv3502391	chr4:133180052-133184100	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
33	esv3502392	chr4:133180152-133184000	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
34	esv3502393	chr4:133180152-133184000	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv1803696	chr4:133180305-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv1813845	chr4:133180305-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
37	esv1843641	chr4:133180305-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
38	esv1843850	chr4:133180305-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
39	esv1849909	chr4:133180305-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
40	esv3464543	chr4:133180406-133183675	Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv513164	chr4:133180589-133183506	Weak transcription	n/a	n/a	inside rSNPs	diseases
42	esv3464540	chr4:133180752-133183550	Weak transcription	n/a	n/a	inside rSNPs	diseases
43	esv3464544	chr4:133180752-133183675	Weak transcription	n/a	n/a	inside rSNPs	diseases
44	esv1847159	chr4:133181085-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
45	esv1812517	chr4:133181261-133183552	Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv1792406	chr4:133181351-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv1801338	chr4:133181351-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1809701	chr4:133181351-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
49	esv1850803	chr4:133181351-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases
50	esv1793180	chr4:133181389-133183544	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:133183000-133184800	Weak transcription	Fetal Thymus	thymus

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