Variant report

Variant	rs12498911
Chromosome Location	chr4:174262102-174262103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2127896	0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832850	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12498911	SCRG1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174257000-174264400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:174257000-174264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:174257200-174264400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:174258000-174262200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:174258000-174264400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:174258200-174262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:174259200-174264400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:174259200-174266400	Weak transcription	HSMM	muscle
10	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
11	chr4:174261800-174262600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:174261800-174263200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:174262000-174262200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:174262000-174262800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:174262000-174262800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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