Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12498988	0.85[ASN][1000 genomes]
rs12498992	0.85[ASN][1000 genomes]
rs12499072	0.92[ASN][1000 genomes]
rs12507650	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12512503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35586425	0.92[ASN][1000 genomes]
rs4355453	0.89[ASN][1000 genomes]
rs6818002	0.85[ASN][1000 genomes]
rs6848165	0.85[ASN][1000 genomes]
rs7660153	0.83[ASN][1000 genomes]
rs7662910	0.82[ASN][1000 genomes]
rs7663050	0.82[ASN][1000 genomes]
rs7663287	0.84[ASN][1000 genomes]
rs7665897	0.85[ASN][1000 genomes]
rs7666032	0.85[ASN][1000 genomes]
rs7667267	0.85[ASN][1000 genomes]
rs7668158	0.82[ASN][1000 genomes]
rs7683720	0.85[ASN][1000 genomes]
rs7696789	0.85[ASN][1000 genomes]
rs899633	0.85[ASN][1000 genomes]
rs899634	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57722000-57725000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:57722800-57725000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:57723400-57725000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:57723400-57727400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:57723400-57727600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:57723600-57725200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:57723800-57725000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:57723800-57725200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:57724200-57725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:57724400-57725400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:57724600-57727200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:57724600-57729400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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