Variant report

Variant	rs12504006
Chromosome Location	chr4:150746787-150746788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11099743	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12642812	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12649285	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17631265	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1876068	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35752804	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61646206	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72963566	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8180112	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150744400-150747000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:150745000-150747000	Enhancers	NHDF-Ad	bronchial
3	chr4:150745400-150746800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:150745400-150746800	Enhancers	HSMMtube	muscle
5	chr4:150745600-150746800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:150745800-150752800	Weak transcription	Hela-S3	cervix
7	chr4:150746000-150747000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:150746000-150747000	Enhancers	HMEC	breast
9	chr4:150746000-150747200	Enhancers	NHEK	skin
10	chr4:150746000-150748600	Weak transcription	Fetal Brain Male	brain
11	chr4:150746200-150747600	Enhancers	Brain Germinal Matrix	brain
12	chr4:150746400-150747000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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