Variant report

Variant	rs12504559
Chromosome Location	chr4:84971710-84971711
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11932985	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1317021	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1921871	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1921884	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv916422	chr4:84965304-85145657	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84970600-84973800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:84970800-84973800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:84970800-84973800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:84970800-84973800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:84971000-84973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:84971000-84973800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:84971200-84973400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:84971200-84973600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr4:84971200-84973600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:84971400-84972600	Enhancers	Fetal Muscle Leg	muscle
11	chr4:84971400-84973400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr4:84971400-84973400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:84971400-84973800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:84971400-84973800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:84971600-84972200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:84971600-84973600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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