Variant report

Variant	rs12504905
Chromosome Location	chr4:6903674-6903675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6891499..6893475-chr4:6901375..6904358,2	K562	blood:
2	chr4:6902931..6905406-chr4:6994609..6996902,2	MCF-7	breast:
3	chr4:6900593..6906797-chr4:6907719..6912652,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12508671	0.83[AMR][1000 genomes]
rs12650974	0.83[AMR][1000 genomes]
rs4689556	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4216	chr4:6876592-6915629	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6896800-6906200	Weak transcription	Liver	Liver
2	chr4:6896800-6909200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:6898000-6909600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:6900600-6905800	Enhancers	HepG2	liver
5	chr4:6901800-6905600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:6901800-6906200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:6902000-6904400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:6902200-6905000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:6902200-6905400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:6902200-6905800	Weak transcription	GM12878-XiMat	blood
11	chr4:6902400-6905800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:6902400-6906200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:6902800-6904400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:6902800-6904600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr4:6902800-6905800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:6902800-6905800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:6902800-6906200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:6903000-6904200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:6903000-6904400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr4:6903200-6904200	Weak transcription	K562	blood
21	chr4:6903200-6904400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:6903200-6904600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:6903200-6906200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:6903400-6903800	Enhancers	Spleen	Spleen
25	chr4:6903400-6904200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:6903400-6904200	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr4:6903400-6904400	Enhancers	Fetal Thymus	thymus
28	chr4:6903400-6904600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr4:6903600-6903800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:6903600-6904000	Enhancers	Right Atrium	heart
31	chr4:6903600-6904200	Bivalent Enhancer	Fetal Stomach	stomach
32	chr4:6903600-6904200	Enhancers	Left Ventricle	heart
33	chr4:6903600-6904200	Enhancers	Stomach Mucosa	stomach
34	chr4:6903600-6904400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr4:6903600-6904400	Enhancers	Gastric	stomach
36	chr4:6903600-6904600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:6903600-6904600	Enhancers	Fetal Heart	heart
38	chr4:6903600-6905200	Enhancers	Right Ventricle	heart

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