Variant report

Variant	rs12505809
Chromosome Location	chr4:131070577-131070578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10428377	1.00[AMR][1000 genomes]
rs10428378	1.00[AMR][1000 genomes]
rs10428487	1.00[AMR][1000 genomes]
rs10518565	0.95[ASN][1000 genomes]
rs10857142	0.94[AMR][1000 genomes]
rs12504004	0.97[AMR][1000 genomes]
rs12504193	1.00[AMR][1000 genomes]
rs12504988	1.00[AMR][1000 genomes]
rs12506695	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12507635	1.00[AMR][1000 genomes]
rs12508592	0.97[AMR][1000 genomes]
rs1602817	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17050858	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17050866	1.00[AMR][1000 genomes]
rs17050867	0.97[AMR][1000 genomes]
rs17050869	0.85[ASN][1000 genomes]
rs1845224	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2391602	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2893314	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35396668	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4863964	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4863965	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4864370	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4864371	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55830439	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55875040	1.00[AMR][1000 genomes]
rs55898536	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55917330	1.00[AMR][1000 genomes]
rs56058926	1.00[AMR][1000 genomes]
rs56102048	1.00[AMR][1000 genomes]
rs56138792	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56291403	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56370907	1.00[AMR][1000 genomes]
rs56993070	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57361902	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57560215	1.00[AMR][1000 genomes]
rs58014327	0.97[AMR][1000 genomes]
rs58301705	0.97[AMR][1000 genomes]
rs58687831	0.95[ASN][1000 genomes]
rs59386731	1.00[AMR][1000 genomes]
rs59590770	1.00[AMR][1000 genomes]
rs59669577	1.00[AMR][1000 genomes]
rs60713285	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60998307	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61007864	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66664915	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66700617	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66819704	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66853091	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66951606	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66953717	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66956392	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66992044	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67052396	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67122917	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67425927	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67634627	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67764870	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68063814	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6851893	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72934696	1.00[AMR][1000 genomes]
rs72934698	0.97[AMR][1000 genomes]
rs8180207	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595416	chr4:130998472-131834405	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2762461	chr4:131004382-131391658	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1025539	chr4:131033276-131728033	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537253	chr4:131033276-131728033	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830061	chr4:131064845-131228710	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv879937	chr4:131065136-131174088	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131067000-131070600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:131068000-131070600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:131068600-131070600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:131069600-131075000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:131070000-131070600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:131070400-131075000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:131070400-131075000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:131070400-131075400	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links