Variant report
Variant | rs12506043 |
---|---|
Chromosome Location | chr4:121276357-121276358 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1554728 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1554729 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2036693 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs2036695 | 0.80[ASN][1000 genomes] |
rs2036696 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2662695 | 0.83[EUR][1000 genomes] |
rs2662697 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs2662698 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2662699 | 0.81[ASN][1000 genomes] |
rs2662700 | 0.81[ASN][1000 genomes] |
rs2662704 | 0.81[AMR][1000 genomes] |
rs2662708 | 0.81[AMR][1000 genomes] |
rs2662715 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2662720 | 0.81[ASN][1000 genomes] |
rs2662721 | 0.82[ASN][1000 genomes] |
rs2662731 | 0.80[ASN][1000 genomes] |
rs2662741 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs2662743 | 0.80[ASN][1000 genomes] |
rs2662747 | 0.82[AMR][1000 genomes] |
rs2693755 | 0.81[ASN][1000 genomes] |
rs2693756 | 0.82[ASN][1000 genomes] |
rs2693758 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2693763 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2693765 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2715951 | 0.83[ASN][1000 genomes] |
rs2715952 | 0.83[ASN][1000 genomes] |
rs2715953 | 0.82[ASN][1000 genomes] |
rs2715958 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2715959 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2715960 | 0.82[ASN][1000 genomes] |
rs2715966 | 0.80[ASN][1000 genomes] |
rs2715968 | 0.80[ASN][1000 genomes] |
rs2715978 | 0.81[AMR][1000 genomes] |
rs2715989 | 0.82[AMR][1000 genomes] |
rs2715993 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs2716009 | 0.81[AMR][1000 genomes] |
rs62322908 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6534188 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6819743 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7691390 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7694494 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs955002 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1007641 | chr4:120884220-121555889 | Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
2 | nsv537234 | chr4:120884220-121555889 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
3 | nsv595333 | chr4:121093248-121440368 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1005240 | chr4:121093285-121420997 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv879852 | chr4:121108734-121768496 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:121275200-121276800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |