Variant report

Variant	rs12506989
Chromosome Location	chr5:74429783-74429784
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10010118	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10015504	0.89[ASN][1000 genomes]
rs10023308	0.90[ASN][1000 genomes]
rs10023311	0.90[ASN][1000 genomes]
rs10023496	0.86[ASN][1000 genomes]
rs10027981	0.87[ASN][1000 genomes]
rs10028695	0.87[ASN][1000 genomes]
rs1017649	0.82[EUR][1000 genomes]
rs10461146	0.82[EUR][1000 genomes]
rs11730296	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11736213	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12501798	0.84[EUR][1000 genomes]
rs12502139	0.82[EUR][1000 genomes]
rs12502685	0.83[EUR][1000 genomes]
rs12502886	0.88[ASN][1000 genomes]
rs12510741	0.85[ASN][1000 genomes]
rs12511033	0.87[ASN][1000 genomes]
rs12511360	0.82[EUR][1000 genomes]
rs13107378	0.82[EUR][1000 genomes]
rs13108102	0.83[EUR][1000 genomes]
rs13117388	0.82[EUR][1000 genomes]
rs1378239	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1454892	0.83[EUR][1000 genomes]
rs1454898	0.82[EUR][1000 genomes]
rs17455826	0.82[EUR][1000 genomes]
rs1840391	0.82[EUR][1000 genomes]
rs1840392	0.82[EUR][1000 genomes]
rs1952399	0.86[ASN][1000 genomes]
rs1958276	0.86[ASN][1000 genomes]
rs2008786	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2124144	0.82[EUR][1000 genomes]
rs2168203	0.85[ASN][1000 genomes]
rs2198635	0.82[EUR][1000 genomes]
rs28493765	0.87[ASN][1000 genomes]
rs2867012	0.87[ASN][1000 genomes]
rs28679752	0.86[ASN][1000 genomes]
rs34398622	0.88[ASN][1000 genomes]
rs34535077	0.83[EUR][1000 genomes]
rs345502	0.81[ASN][1000 genomes]
rs345507	0.87[ASN][1000 genomes]
rs34595864	0.82[EUR][1000 genomes]
rs35290872	0.81[EUR][1000 genomes]
rs35291597	0.84[EUR][1000 genomes]
rs35419939	0.83[EUR][1000 genomes]
rs35683023	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35828300	0.82[EUR][1000 genomes]
rs385693	0.87[ASN][1000 genomes]
rs4241623	0.88[ASN][1000 genomes]
rs4859524	0.87[ASN][1000 genomes]
rs4859918	0.88[ASN][1000 genomes]
rs4859920	0.88[ASN][1000 genomes]
rs4859923	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859924	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58101131	0.84[EUR][1000 genomes]
rs62310017	0.84[EUR][1000 genomes]
rs62310023	0.82[EUR][1000 genomes]
rs62310045	0.83[EUR][1000 genomes]
rs6533565	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6533571	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6854043	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6856362	0.81[EUR][1000 genomes]
rs7656032	0.81[EUR][1000 genomes]
rs7694740	0.88[ASN][1000 genomes]
rs7696792	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7697230	0.86[ASN][1000 genomes]
rs7698625	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9762380	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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