Variant report

Variant	rs12507399
Chromosome Location	chr4:92280849-92280850
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10516892	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11938361	0.89[ASN][1000 genomes]
rs11938470	0.89[ASN][1000 genomes]
rs12186312	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12498254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12507382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12511436	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547594	0.84[CEU][hapmap]
rs17018388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17214010	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1830354	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141397	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs2870310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34594961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4096930	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4096931	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4128703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4128704	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4128705	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4411947	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6829492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72880824	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880827	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880830	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv879566	chr4:92215966-92322333	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879567	chr4:92215966-92413671	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv522208	chr4:92241587-92283771	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1830673	chr4:92241587-92379081	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879568	chr4:92244300-92429961	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv529020	chr4:92253926-92293482	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv594849	chr4:92271993-92285150	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv966558	chr4:92273882-92285480	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:92279800-92281000	Enhancers	Rectal Mucosa Donor 31	rectum

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