Variant report

Variant	rs12508774
Chromosome Location	chr4:131886716-131886717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10017063	1.00[EUR][1000 genomes]
rs10023162	1.00[EUR][1000 genomes]
rs10212862	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1382169	1.00[EUR][1000 genomes]
rs1478089	1.00[EUR][1000 genomes]
rs1691536	1.00[EUR][1000 genomes]
rs17051099	1.00[EUR][1000 genomes]
rs17051135	1.00[EUR][1000 genomes]
rs17051136	1.00[EUR][1000 genomes]
rs17051137	1.00[EUR][1000 genomes]
rs28867131	1.00[EUR][1000 genomes]
rs366963	1.00[EUR][1000 genomes]
rs399631	1.00[EUR][1000 genomes]
rs423702	1.00[EUR][1000 genomes]
rs429500	1.00[EUR][1000 genomes]
rs72930354	1.00[EUR][1000 genomes]
rs72938364	1.00[EUR][1000 genomes]
rs72938369	1.00[EUR][1000 genomes]
rs7667021	1.00[EUR][1000 genomes]
rs7690454	1.00[EUR][1000 genomes]
rs7695704	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030585	chr4:131509950-132482010	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537260	chr4:131509950-132482010	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv497898	chr4:131709672-132625883	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1032035	chr4:131792421-131986752	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv879963	chr4:131811430-131998959	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv879964	chr4:131831029-131897140	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv879965	chr4:131834405-131963445	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv432626	chr4:131837395-132602395	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv830063	chr4:131839913-132000709	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv879966	chr4:131869250-132189098	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:131885800-131887600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:131886400-131887200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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