The 2.0 version of rSNPBase

Variant report

Variant rs12509730
Chromosome Location chr4:54228199-54228200
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr4:54188200-54231200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr4:54213600-54228600 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr4:54213800-54230400 Weak transcription Fetal Kidney kidney
5 chr4:54214000-54230800 Weak transcription Aorta Aorta
6 chr4:54214000-54231200 Weak transcription Lung lung
7 chr4:54214200-54228200 Weak transcription Esophagus oesophagus
8 chr4:54214200-54228200 Weak transcription Fetal Brain Female brain
9 chr4:54214200-54228200 Weak transcription NH-A brain
10 chr4:54214200-54228800 Weak transcription Colon Smooth Muscle Colon
11 chr4:54214200-54229000 Weak transcription HUVEC blood vessel
12 chr4:54214200-54230000 Weak transcription Fetal Heart heart
13 chr4:54214200-54230000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr4:54214200-54230400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr4:54214200-54230800 Weak transcription Brain Angular Gyrus brain
16 chr4:54214200-54230800 Weak transcription Brain Substantia Nigra brain
17 chr4:54214200-54230800 Weak transcription Fetal Lung lung
18 chr4:54214200-54230800 Weak transcription Right Ventricle heart
19 chr4:54214200-54230800 Weak transcription HSMMtube muscle
20 chr4:54214200-54231000 Weak transcription Brain Cingulate Gyrus brain
21 chr4:54214200-54231000 Weak transcription Rectal Smooth Muscle rectum
22 chr4:54214200-54231200 Weak transcription Spleen Spleen
23 chr4:54214400-54230200 Weak transcription HMEC breast
24 chr4:54214600-54230000 Weak transcription Brain Anterior Caudate brain
25 chr4:54214800-54230200 Weak transcription Placenta Amnion Placenta Amnion
26 chr4:54218800-54230800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr4:54219000-54228400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr4:54219200-54229400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr4:54219200-54229400 Weak transcription Fetal Muscle Trunk muscle
30 chr4:54219200-54230000 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr4:54219400-54229400 Weak transcription Left Ventricle heart
32 chr4:54219400-54230400 Weak transcription Brain Inferior Temporal Lobe brain
33 chr4:54219400-54230800 Weak transcription Thymus Thymus
34 chr4:54219600-54228800 Weak transcription Adipose Nuclei Adipose
35 chr4:54219600-54229000 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr4:54219600-54230000 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr4:54219600-54230200 Weak transcription Primary hematopoietic stem cells blood
38 chr4:54219800-54228200 Weak transcription Liver Liver
39 chr4:54219800-54228200 Weak transcription Gastric stomach
40 chr4:54219800-54230400 Weak transcription Stomach Smooth Muscle stomach
41 chr4:54220400-54230400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr4:54220400-54230800 Weak transcription Fetal Muscle Leg muscle
43 chr4:54220600-54230800 Weak transcription Fetal Thymus thymus
44 chr4:54220800-54228400 Weak transcription Primary monocytes fromperipheralblood blood
45 chr4:54220800-54228400 Weak transcription Fetal Adrenal Gland Adrenal Gland
46 chr4:54220800-54229200 Weak transcription Fetal Stomach stomach
47 chr4:54220800-54230400 Weak transcription Fetal Intestine Large intestine
48 chr4:54221200-54230800 Weak transcription Fetal Intestine Small intestine
49 chr4:54221400-54228200 Weak transcription HepG2 liver
50 chr4:54222000-54228200 Weak transcription Ovary ovary

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Last update: Aug 31, 2015