Variant report

Variant	rs12509782
Chromosome Location	chr4:151605828-151605829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6855729	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869051	chr4:151347901-151737781	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024820	chr4:151364078-151943561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1032070	chr4:151514664-151775259	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830113	chr4:151538184-151691942	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1029861	chr4:151556384-151720601	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151487200-151655000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:151577600-151637000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:151582200-151642800	Weak transcription	Left Ventricle	heart
4	chr4:151591200-151607600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:151593200-151610800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:151595000-151654800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:151596000-151608600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:151599600-151611200	Weak transcription	K562	blood
9	chr4:151600000-151606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:151600800-151606800	Weak transcription	Adipose Nuclei	Adipose
11	chr4:151601400-151606000	Weak transcription	Brain Angular Gyrus	brain
12	chr4:151601600-151644400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:151601800-151606000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:151602000-151606000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:151602000-151606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:151602000-151615800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:151602000-151617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:151602200-151643800	Weak transcription	Fetal Intestine Small	intestine
19	chr4:151602400-151621800	Weak transcription	Fetal Intestine Large	intestine
20	chr4:151603600-151611600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:151604400-151606200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:151604600-151606000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:151604600-151606000	Enhancers	NHEK	skin
24	chr4:151604600-151606200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:151604600-151606200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:151604600-151606200	Enhancers	HMEC	breast
27	chr4:151604800-151644600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:151605000-151606200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr4:151605000-151606200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:151605000-151606200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:151605000-151622800	Weak transcription	Primary B cells from cord blood	blood
32	chr4:151605200-151606000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:151605200-151606200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:151605200-151606200	Enhancers	Brain Hippocampus Middle	brain
35	chr4:151605200-151606200	Enhancers	Brain Substantia Nigra	brain
36	chr4:151605200-151606400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr4:151605200-151608800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr4:151605200-151610400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:151605200-151616400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:151605400-151606200	Enhancers	H9 Cell Line	embryonic stem cell
41	chr4:151605400-151610200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr4:151605400-151619400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:151605400-151629000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr4:151605600-151644200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:151605800-151606200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links