Variant report

Variant	rs12510036
Chromosome Location	chr4:69763314-69763315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:69730313..69732082-chr4:69762356..69764791,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10001065	0.82[EUR][1000 genomes]
rs10013724	0.82[EUR][1000 genomes]
rs10024664	0.82[EUR][1000 genomes]
rs10032748	0.81[EUR][1000 genomes]
rs10903220	0.82[EUR][1000 genomes]
rs10903221	0.82[EUR][1000 genomes]
rs1159714	0.87[EUR][1000 genomes]
rs1159715	0.87[EUR][1000 genomes]
rs11736796	0.81[EUR][1000 genomes]
rs11940320	1.00[EUR][1000 genomes]
rs11946857	0.89[EUR][1000 genomes]
rs12500933	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12509066	0.89[EUR][1000 genomes]
rs13113544	0.87[EUR][1000 genomes]
rs13128286	0.81[EUR][1000 genomes]
rs13128843	0.82[EUR][1000 genomes]
rs1458236	0.80[EUR][1000 genomes]
rs1458237	0.81[EUR][1000 genomes]
rs17146961	0.84[EUR][1000 genomes]
rs17146967	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1841037	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1902925	0.82[EUR][1000 genomes]
rs1902926	0.82[EUR][1000 genomes]
rs1902927	0.82[EUR][1000 genomes]
rs1902928	0.82[EUR][1000 genomes]
rs1962953	0.82[EUR][1000 genomes]
rs1968764	0.95[EUR][1000 genomes]
rs1989329	0.93[EUR][1000 genomes]
rs1993547	0.87[EUR][1000 genomes]
rs2009312	0.82[EUR][1000 genomes]
rs2017125	0.82[EUR][1000 genomes]
rs2018150	0.82[EUR][1000 genomes]
rs2125305	0.82[EUR][1000 genomes]
rs2168840	0.89[EUR][1000 genomes]
rs2331577	0.81[EUR][1000 genomes]
rs3088249	0.82[EUR][1000 genomes]
rs3749511	0.81[EUR][1000 genomes]
rs3749513	0.82[EUR][1000 genomes]
rs3828504	0.81[EUR][1000 genomes]
rs4412056	0.81[EUR][1000 genomes]
rs4518317	0.82[EUR][1000 genomes]
rs4694358	0.99[EUR][1000 genomes]
rs4694389	0.98[EUR][1000 genomes]
rs4694448	0.87[EUR][1000 genomes]
rs4694449	0.87[EUR][1000 genomes]
rs55647928	0.89[EUR][1000 genomes]
rs55795005	0.89[EUR][1000 genomes]
rs56371633	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6600857	0.82[EUR][1000 genomes]
rs6842605	0.98[EUR][1000 genomes]
rs6843537	0.87[EUR][1000 genomes]
rs6843550	0.89[EUR][1000 genomes]
rs6847539	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6849125	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7666446	0.82[EUR][1000 genomes]
rs7674475	0.82[EUR][1000 genomes]
rs969338	0.87[EUR][1000 genomes]
rs994229	0.82[EUR][1000 genomes]
rs9996467	0.82[EUR][1000 genomes]
rs9999996	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005513	chr4:69446718-69890307	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv879377	chr4:69663003-69771935	Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv879378	chr4:69673775-69771935	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv3398036	chr4:69700493-69841391	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
9	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
10	nsv436447	chr4:69743339-69851390	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv518690	chr4:69752468-69772694	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69762000-69769400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:69763200-69763800	Weak transcription	Fetal Intestine Small	intestine
3	chr4:69763200-69764600	Weak transcription	Liver	Liver
4	chr4:69763200-69769400	Weak transcription	Pancreas	Pancrea
5	chr4:69763200-69770200	Weak transcription	Fetal Intestine Large	intestine

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