Variant report

Variant	rs12510925
Chromosome Location	chr4:97077088-97077089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12498775	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12499791	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12501335	1.00[ASN][1000 genomes]
rs55926421	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56217582	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58372395	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73842425	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73842426	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998994	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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