Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002090	1.00[CEU][hapmap]
rs10017202	0.97[ASN][1000 genomes]
rs10026915	1.00[CEU][hapmap]
rs1107674	0.85[CHB][hapmap]
rs11133468	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573061	0.82[CEU][hapmap]
rs11941996	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12510703	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277296	0.82[CEU][hapmap]
rs17182939	0.82[CEU][hapmap]
rs1980095	0.81[EUR][1000 genomes]
rs2227902	0.82[CEU][hapmap]
rs2271806	1.00[CEU][hapmap]
rs2271807	1.00[CEU][hapmap]
rs28472594	0.81[EUR][1000 genomes]
rs28725345	0.97[ASN][1000 genomes]
rs3755901	1.00[CEU][hapmap]
rs3775083	1.00[CEU][hapmap]
rs41344750	1.00[CEU][hapmap]
rs4560473	0.93[LWK][hapmap]
rs6554404	0.82[CEU][hapmap]
rs6837593	0.82[CEU][hapmap]
rs73242603	0.81[EUR][1000 genomes]
rs7654665	0.82[CEU][hapmap]
rs781552	0.81[EUR][1000 genomes]
rs781557	0.81[EUR][1000 genomes]
rs781559	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57741400-57750800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:57744400-57748800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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