Variant report

Variant	rs12513675
Chromosome Location	chr5:113029695-113029696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11241233	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12657961	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1482371	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61429151	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372780	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62372806	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6886436	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113027200-113030400	Enhancers	Fetal Brain Male	brain
2	chr5:113027200-113030800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:113028000-113029800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:113028200-113030200	Enhancers	Fetal Lung	lung
5	chr5:113028200-113030400	Enhancers	Fetal Kidney	kidney
6	chr5:113028200-113031000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:113028400-113029800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:113028400-113030000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:113028400-113030000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:113028800-113029800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:113029000-113030200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:113029200-113029800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr5:113029200-113029800	Enhancers	Adipose Nuclei	Adipose
14	chr5:113029200-113029800	Enhancers	Fetal Muscle Leg	muscle
15	chr5:113029200-113030000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:113029200-113030000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:113029200-113030200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:113029200-113030400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr5:113029200-113034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:113029400-113029800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:113029400-113029800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr5:113029400-113029800	Enhancers	Fetal Brain Female	brain
23	chr5:113029400-113031600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:113029600-113029800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
25	chr5:113029600-113029800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
26	chr5:113029600-113030400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:113029600-113030400	Enhancers	Brain Germinal Matrix	brain
28	chr5:113029600-113030600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:113029600-113030600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:113029600-113030800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr5:113029600-113030800	Enhancers	Cortex derived primary cultured neurospheres	brain

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