Variant report
Variant | rs12515012 |
---|---|
Chromosome Location | chr5:44694535-44694536 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10447145 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11949847 | 0.80[EUR][1000 genomes] |
rs13179137 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13185555 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1438825 | 0.97[EUR][1000 genomes] |
rs16901937 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1898701 | 0.99[EUR][1000 genomes] |
rs2013513 | 1.00[CEU][hapmap] |
rs2165009 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2218080 | 0.92[CEU][hapmap];0.87[EUR][1000 genomes] |
rs2218081 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
rs2330572 | 0.81[EUR][1000 genomes] |
rs6451770 | 0.89[EUR][1000 genomes] |
rs6861560 | 0.97[EUR][1000 genomes] |
rs714130 | 1.00[CEU][hapmap] |
rs920329 | 1.00[CEU][hapmap] |
rs930395 | 0.83[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830278 | chr5:44540863-44713312 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv880457 | chr5:44632008-44800665 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv830279 | chr5:44688175-44860815 | Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:44693800-44694600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |