Variant report

Variant	rs1251526
Chromosome Location	chr1:76487502-76487503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10127768	1.00[ASN][1000 genomes]
rs10493581	0.87[ASN][1000 genomes]
rs1144344	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1146661	1.00[CHB][hapmap]
rs1146662	1.00[CHB][hapmap]
rs1251476	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1251484	0.83[ASW][hapmap];0.92[LWK][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs1251485	0.83[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1251499	1.00[ASN][1000 genomes]
rs1251519	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1251528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340691	0.86[AFR][1000 genomes]
rs17098016	1.00[ASN][1000 genomes]
rs17098027	1.00[ASN][1000 genomes]
rs1770895	0.81[AFR][1000 genomes]
rs5745520	1.00[JPT][hapmap]
rs7537853	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484600-76489400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76484800-76489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:76485000-76488400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:76487400-76487600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:76487400-76487600	Enhancers	NHEK	skin
6	chr1:76487400-76487800	Enhancers	HMEC	breast
7	chr1:76487400-76488800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr1:76487400-76491000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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