Variant report

Variant	rs12516408
Chromosome Location	chr5:4932851-4932852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10475278	0.80[EUR][1000 genomes]
rs12521477	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13167152	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs621356	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6863463	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6876860	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs697718	0.80[EUR][1000 genomes]
rs891157	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9647567	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019579	chr5:4557477-4997411	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:4930400-4937800	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:4931400-4935600	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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