Variant report

Variant	rs12516880
Chromosome Location	chr5:126720106-126720107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17763370	0.83[AFR][1000 genomes]
rs73344999	0.85[EUR][1000 genomes]
rs73346910	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019821	chr5:126658200-126934917	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537894	chr5:126658200-126934917	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1032587	chr5:126691103-126826978	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126691000-126746000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:126707800-126725400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:126707800-126729000	Weak transcription	Brain Substantia Nigra	brain
4	chr5:126707800-126731600	Weak transcription	Brain Anterior Caudate	brain
5	chr5:126710000-126721800	Weak transcription	HSMM	muscle
6	chr5:126710000-126731800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:126710200-126741200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:126711800-126724800	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:126712800-126734200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:126714800-126732200	Weak transcription	HSMMtube	muscle
11	chr5:126715200-126731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:126719000-126720200	Strong transcription	Fetal Muscle Leg	muscle
13	chr5:126719600-126720200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:126720000-126720200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:126720000-126721400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:126720000-126732400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:126720000-126732400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:126720000-126742000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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