Variant report

Variant	rs12522523
Chromosome Location	chr5:151586580-151586581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10072147	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11745308	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11750592	0.90[EUR][1000 genomes]
rs11959020	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12515695	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12518800	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs154687	0.81[GIH][hapmap]
rs17112911	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2081998	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62396588	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5073	chr5:151551846-151597040	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151586200-151586800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:151586400-151586600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr5:151586400-151586800	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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