Variant report

Variant	rs12522582
Chromosome Location	chr5:75827676-75827677
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75824401..75825972-chr5:75826826..75829137,2	MCF-7	breast:
2	chr5:75826263..75829016-chr5:75865983..75867633,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4145111	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4704323	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4704324	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6872396	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022032	chr5:75785106-75914003	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv598679	chr5:75823965-75914729	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75806800-75834200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:75806800-75839200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:75810600-75828400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:75815000-75829000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:75815200-75828000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:75817800-75827800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:75818200-75828400	Weak transcription	Gastric	stomach
8	chr5:75818400-75830800	Weak transcription	Pancreas	Pancrea
9	chr5:75819400-75828200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:75820200-75832600	Weak transcription	Fetal Intestine Small	intestine
11	chr5:75821200-75828400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:75821800-75828400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:75822200-75831200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:75822200-75831200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:75823000-75838400	Weak transcription	Primary T cells from cord blood	blood
16	chr5:75823200-75830000	Weak transcription	Stomach Mucosa	stomach
17	chr5:75823200-75830800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:75823400-75828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:75823400-75828400	Weak transcription	Lung	lung
20	chr5:75823400-75832000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:75824000-75831200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:75824000-75831400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:75824200-75830000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:75824200-75834400	Weak transcription	Fetal Thymus	thymus
25	chr5:75825000-75827800	Weak transcription	Placenta	Placenta
26	chr5:75825000-75831000	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr5:75825800-75831400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:75826200-75828400	Weak transcription	K562	blood
29	chr5:75826400-75828600	Weak transcription	Liver	Liver
30	chr5:75826600-75834800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:75826800-75828400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:75826800-75828800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:75826800-75830800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr5:75826800-75833000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:75826800-75834000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:75826800-75834600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:75826800-75840000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:75827000-75828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:75827000-75829800	Weak transcription	HepG2	liver
40	chr5:75827000-75835000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr5:75827400-75828600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr5:75827600-75829200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:75827600-75834200	Weak transcription	Primary hematopoietic stem cells	blood

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