Variant report

Variant	rs12522670
Chromosome Location	chr5:151185433-151185434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151151126..151152953-chr5:151183567..151186046,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

rs_ID	r²[population]
rs1062177	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs17529681	1.00[AFR][1000 genomes]
rs17741826	0.85[CEU][hapmap]
rs17804178	0.82[AMR][1000 genomes]
rs2915875	1.00[AFR][1000 genomes]
rs2915876	0.84[CEU][hapmap]
rs2915882	0.85[CEU][hapmap]
rs2915887	0.82[AMR][1000 genomes]
rs2964584	0.84[CEU][hapmap]
rs2964612	0.82[AMR][1000 genomes]
rs892005	0.82[AMR][1000 genomes]
rs892006	0.84[CEU][hapmap]
rs973529	0.82[AMR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs12522670	RP11-54C4.1	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151164000-151187800	Weak transcription	Stomach Mucosa	stomach
2	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
3	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:151164400-151194800	Strong transcription	Dnd41	blood
6	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:151164800-151196800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:151165200-151197200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:151165600-151191600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:151165600-151197200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:151165800-151188200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr5:151165800-151192800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:151165800-151193000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:151165800-151194800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:151165800-151195000	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:151165800-151196200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:151165800-151196800	Strong transcription	GM12878-XiMat	blood
19	chr5:151165800-151197000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:151166000-151185800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:151166000-151186000	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr5:151166000-151187200	Strong transcription	NHEK	skin
23	chr5:151166000-151192800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:151166000-151194800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:151166000-151196400	Strong transcription	Fetal Thymus	thymus
26	chr5:151166000-151196600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr5:151166000-151196800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:151166000-151197000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:151166200-151186600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:151166200-151192800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr5:151166200-151196800	Strong transcription	Liver	Liver
32	chr5:151166400-151186400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:151166400-151192400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:151166600-151194800	Strong transcription	Fetal Intestine Large	intestine
35	chr5:151167200-151188400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr5:151167200-151191600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:151167200-151195000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr5:151170600-151186200	Strong transcription	Brain Hippocampus Middle	brain
39	chr5:151171800-151205200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr5:151173200-151186800	Strong transcription	HepG2	liver
41	chr5:151175200-151185800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:151178000-151195200	Weak transcription	Fetal Brain Male	brain
43	chr5:151179000-151198600	Strong transcription	A549	lung
44	chr5:151179200-151185800	Strong transcription	HMEC	breast
45	chr5:151179400-151192600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:151179600-151196400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:151179800-151208400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:151182200-151189400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr5:151182200-151189400	Weak transcription	HSMMtube	muscle
50	chr5:151182600-151187000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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