Variant report

Variant	rs12522940
Chromosome Location	chr5:113788593-113788594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12153101	0.82[ASN][1000 genomes]
rs13357700	0.90[ASN][1000 genomes]
rs28592267	0.82[ASN][1000 genomes]
rs4435855	0.85[ASN][1000 genomes]
rs72801852	0.93[ASN][1000 genomes]
rs7706228	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113786200-113793200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:113786400-113791600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:113786400-113793000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:113786400-113793000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:113786400-113793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:113786600-113793200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:113786600-113793200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:113786600-113793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:113788200-113788600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:113788200-113789000	Enhancers	Fetal Muscle Leg	muscle
11	chr5:113788400-113793200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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