Variant report

Variant	rs12523097
Chromosome Location	chr5:167411400-167411401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10039736	0.84[EUR][1000 genomes]
rs11134483	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11134485	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11955430	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12522181	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1345735	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17069646	0.87[EUR][1000 genomes]
rs1821254	0.80[EUR][1000 genomes]
rs2546957	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2546960	0.81[EUR][1000 genomes]
rs2617956	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2617981	0.85[ASN][1000 genomes]
rs6890434	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs730256	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs992047	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167405400-167412600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:167408000-167419800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167408200-167413400	Weak transcription	Left Ventricle	heart
5	chr5:167408200-167419800	Weak transcription	NHEK	skin
6	chr5:167408400-167413200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167408400-167418400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167408400-167419200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167409800-167412400	Weak transcription	Right Ventricle	heart
10	chr5:167410400-167411800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:167410600-167412200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:167410600-167412400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:167410600-167412400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:167410600-167413200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:167410800-167412200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr5:167411000-167412400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:167411000-167413200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links