Variant report

Variant	rs12523678
Chromosome Location	chr6:15458212-15458213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15456622..15459538-chr6:15460887..15465633,6	MCF-7	breast:
2	chr6:15445515..15448315-chr6:15457495..15459550,2	MCF-7	breast:
3	chr6:15456384..15458353-chr6:15458508..15460515,2	K562	blood:
4	chr6:15456340..15458507-chr6:15459098..15460711,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2237142	1.00[GIH][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15435800-15487600	Weak transcription	Colonic Mucosa	Colon
2	chr6:15440000-15468600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:15444600-15477400	Weak transcription	Hela-S3	cervix
4	chr6:15444800-15468800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:15445400-15458600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:15445400-15474000	Weak transcription	NH-A	brain
7	chr6:15445600-15462600	Weak transcription	NHLF	lung
8	chr6:15445800-15460000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:15446000-15459200	Weak transcription	Ovary	ovary
10	chr6:15446000-15462800	Weak transcription	HSMMtube	muscle
11	chr6:15446600-15479800	Weak transcription	Gastric	stomach
12	chr6:15446800-15458600	Weak transcription	Right Ventricle	heart
13	chr6:15447800-15460400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:15448200-15479800	Weak transcription	Pancreas	Pancrea
15	chr6:15449000-15458600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:15449600-15458600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:15449800-15462800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:15450000-15458600	Weak transcription	Spleen	Spleen
19	chr6:15452000-15459200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:15452400-15475800	Weak transcription	Aorta	Aorta
21	chr6:15453000-15460800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr6:15453000-15463000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:15453000-15468600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:15453000-15481000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:15453600-15459000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:15453600-15459200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr6:15453600-15468800	Weak transcription	Dnd41	blood
28	chr6:15453800-15459200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:15453800-15462600	Weak transcription	Osteobl	bone
30	chr6:15453800-15462800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:15454000-15461600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:15454000-15462600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:15454200-15462600	Weak transcription	HSMM	muscle
34	chr6:15454200-15468800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:15454200-15468800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:15454400-15458400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:15454800-15459200	Weak transcription	Psoas Muscle	Psoas
38	chr6:15455000-15459200	Weak transcription	Right Atrium	heart
39	chr6:15455200-15458400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:15455200-15460000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:15455200-15468800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:15455400-15458400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:15455400-15458600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:15455400-15459000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr6:15455400-15459000	Weak transcription	Thymus	Thymus
46	chr6:15455400-15460400	Weak transcription	Lung	lung
47	chr6:15455400-15461400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:15455400-15462600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:15455400-15462800	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:15455400-15463000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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