Variant report

Variant	rs12525094
Chromosome Location	chr6:143042815-143042816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12526857	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12527229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12527230	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12530167	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17071973	0.89[EUR][1000 genomes]
rs17071978	0.89[EUR][1000 genomes]
rs17528167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3850226	0.85[EUR][1000 genomes]
rs57713178	0.89[EUR][1000 genomes]
rs9496443	0.94[ASN][1000 genomes]
rs9496444	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143040400-143049200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143040800-143044600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:143041800-143043200	Enhancers	Primary B cells from cord blood	blood
4	chr6:143042000-143043400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:143042200-143043200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:143042200-143043400	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:143042200-143043400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:143042400-143043800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:143042600-143043200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:143042600-143046000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:143042800-143043000	Enhancers	GM12878-XiMat	blood
12	chr6:143042800-143046000	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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