Variant report

Variant	rs12526291
Chromosome Location	chr6:33874378-33874379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:33874247-33874529	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr6:33874343-33874547	HepG2	liver:	n/a	n/a
3	CEBPB	chr6:33874300-33874515	IMR90	lung:	n/a	n/a
4	MYC	chr6:33874285-33874506	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr6:33874300-33874450	HEK293	kidney:	n/a	n/a
6	CEBPB	chr6:33874266-33874663	MCF-7	breast:	n/a	n/a
7	FOS	chr6:33874306-33874522	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr6:33874264-33874717	MCF-7	breast:	n/a	n/a
9	STAT3	chr6:33874292-33874537	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr6:33874339-33874483	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr6:33874285-33874546	MCF10A-Er-Src	breast:	n/a	chr6:33874518-33874530
12	CEBPB	chr6:33874314-33874600	K562	blood:	n/a	n/a
13	MYC	chr6:33874272-33874590	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33871240..33875960-chr6:33876004..33878253,4	K562	blood:
2	chr6:33867717..33870484-chr6:33872080..33874838,5	MCF-7	breast:
3	chr6:33871826..33874776-chr6:33875956..33877869,2	MCF-7	breast:
4	chr6:33854576..33856833-chr6:33873252..33875998,2	K562	blood:
5	chr6:33872397..33874588-chr6:33952350..33955132,2	MCF-7	breast:
6	chr6:33678377..33680727-chr6:33873373..33875041,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233183	TF binding region
ENSG00000137288	Chromatin interaction
ENSG00000233183	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16869672	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16869708	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4713718	0.91[AMR][1000 genomes]
rs4713720	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
2	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:33870800-33875200	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:33870800-33876600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:33871400-33875400	Enhancers	Thymus	Thymus
6	chr6:33871600-33874600	Enhancers	GM12878-XiMat	blood
7	chr6:33871600-33876400	Enhancers	Fetal Intestine Small	intestine
8	chr6:33871800-33875600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:33872200-33874400	Flanking Active TSS	Liver	Liver
10	chr6:33872400-33874800	Weak transcription	Pancreas	Pancrea
11	chr6:33872800-33874800	Weak transcription	Fetal Kidney	kidney
12	chr6:33872800-33878000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:33872800-33878800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:33873000-33876400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:33873000-33876400	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:33873000-33884000	Enhancers	Fetal Thymus	thymus
17	chr6:33873200-33874600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:33873200-33875200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:33873200-33876000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:33873200-33876600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:33873200-33877400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:33873200-33878200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:33873400-33874400	Enhancers	K562	blood
24	chr6:33873400-33875400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:33873400-33875600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:33873400-33876800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:33873400-33878000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:33873400-33878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:33873400-33878400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:33873400-33883800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:33873600-33874600	Weak transcription	Fetal Intestine Large	intestine
32	chr6:33873600-33876400	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:33873800-33874600	Enhancers	Primary B cells from cord blood	blood
34	chr6:33873800-33877000	Enhancers	Primary T cells from cord blood	blood
35	chr6:33873800-33879000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr6:33873800-33882000	Weak transcription	Spleen	Spleen
37	chr6:33874000-33881800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:33874200-33875000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr6:33874200-33876800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:33874200-33882200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:33874200-33889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links